Machine Learning Training Pipeline

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Machine Learning Training Pipeline

Relevant source files

• python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynbipynb)
• python/narrative_stack/notebooks/stage1_preprocessing.ipynb

Purpose and Scope

This page documents the machine learning training pipeline for the narrative_stack system, specifically the Stage 1 autoencoder that learns latent representations of US GAAP financial concepts. The training pipeline consumes preprocessed concept/unit/value triplets and their semantic embeddings (see Data Ingestion & Preprocessing) to train a neural network that can encode financial data into a compressed latent space.

The pipeline uses PyTorch Lightning for training orchestration, implements custom iterable datasets for efficient data streaming from the simd-r-drive WebSocket server, and provides comprehensive experiment tracking through TensorBoard. For details on the underlying storage mechanisms and data retrieval, see Database & Storage Integration.

Training Pipeline Architecture

The training pipeline operates as a streaming system that continuously fetches preprocessed triplets from the UsGaapStore and feeds them through the autoencoder model. The architecture emphasizes memory efficiency and reproducibility.

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb456-556

graph TB
    subgraph "Data Source Layer"
        DataStoreWsClient["DataStoreWsClient\n(simd_r_drive_ws_client)"]
UsGaapStore["UsGaapStore\nlookup_by_index()"]
end
    
    subgraph "Dataset Layer"
        IterableDataset["IterableConceptValueDataset\ninternal_batch_size=64\nreturn_scaler=True\nshuffle=True/False"]
CollateFunction["collate_with_scaler()\nBatch construction"]
end
    
    subgraph "PyTorch Lightning Training Loop"
        DataLoader["DataLoader\nbatch_size from hparams\nnum_workers=2\npin_memory=True\npersistent_workers=True"]
Model["Stage1Autoencoder\nEncoder → Latent → Decoder"]
Optimizer["Adam Optimizer\n+ CosineAnnealingWarmRestarts\nReduceLROnPlateau"]
Trainer["pl.Trainer\nEarlyStopping\nModelCheckpoint\ngradient_clip_val"]
end
    
    subgraph "Monitoring & Persistence"
        TensorBoard["TensorBoardLogger\ntrain_loss\nval_loss_epoch\nlearning_rate"]
Checkpoints["Model Checkpoints\n.ckpt files\nsave_top_k=1\nmonitor='val_loss_epoch'"]
end
    
 
   DataStoreWsClient --> UsGaapStore
 
   UsGaapStore --> IterableDataset
 
   IterableDataset --> CollateFunction
 
   CollateFunction --> DataLoader
    
 
   DataLoader --> Model
 
   Model --> Optimizer
 
   Optimizer --> Trainer
    
 
   Trainer --> TensorBoard
 
   Trainer --> Checkpoints
    
 
   Checkpoints -.->|Resume training| Model

Stage1Autoencoder Model

Model Architecture

The Stage1Autoencoder is a fully-connected autoencoder that learns to compress financial concept embeddings combined with their scaled values into a lower-dimensional latent space. The model reconstructs its input, forcing the latent representation to capture the most important features.

graph LR
    Input["Input Tensor\n[embedding + scaled_value]\nDimension: embedding_dim + 1"]
Encoder["Encoder Network\nfc1 → dropout → ReLU\nfc2 → dropout → ReLU"]
Latent["Latent Space\nDimension: latent_dim"]
Decoder["Decoder Network\nfc3 → dropout → ReLU\nfc4 → dropout → output"]
Output["Reconstructed Input\nSame dimension as input"]
Loss["MSE Loss\ninput vs output"]
Input --> Encoder
 
   Encoder --> Latent
 
   Latent --> Decoder
 
   Decoder --> Output
 
   Output --> Loss
 
   Input --> Loss

Hyperparameters

The model exposes the following configurable hyperparameters through its hparams attribute:

The model can be instantiated with default parameters or loaded from a checkpoint with overridden hyperparameters:

Loading from checkpoint with modified learning rate: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb479-486

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb479-490

Loss Function and Optimization

The model uses Mean Squared Error (MSE) loss between the input and reconstructed output. The optimization strategy combines:

• Adam optimizer with configurable learning rate and weight decay
• CosineAnnealingWarmRestarts scheduler for cyclical learning rate annealing
• ReduceLROnPlateau for adaptive learning rate reduction when validation loss plateaus

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb479-490

Dataset and Data Loading

IterableConceptValueDataset

The IterableConceptValueDataset is a custom PyTorch IterableDataset that streams training data from the UsGaapStore without loading the entire dataset into memory. This design enables training on datasets larger than available RAM.

Key characteristics:

graph TB
    subgraph "Dataset Initialization"
        Config["simd_r_drive_server_config\nhost + port"]
Params["Dataset Parameters\ninternal_batch_size\nreturn_scaler\nshuffle"]
end
    
    subgraph "Data Streaming Process"
        Store["UsGaapStore instance\nget_triplet_count()"]
IndexGen["Index Generator\nSequential or shuffled\nbased on shuffle param"]
BatchFetch["Internal Batching\nFetch internal_batch_size items\nvia batch_lookup_by_indices()"]
Unpack["Unpack Triplet Data\nembedding\nscaled_value\nscaler (optional)"]
end
    
    subgraph "Output"
        Tensor["PyTorch Tensors\nx: [embedding + scaled_value]\ny: [embedding + scaled_value]\nscaler: RobustScaler object"]
end
    
 
   Config --> Store
 
   Params --> IndexGen
 
   Store --> IndexGen
 
   IndexGen --> BatchFetch
 
   BatchFetch --> Unpack
 
   Unpack --> Tensor

• Iterable streaming : Data is fetched on-demand during iteration, not preloaded
• Internal batching : Fetches internal_batch_size items at once from the WebSocket server to reduce network overhead (typically 64)
• Optional shuffling : Can randomize index order for training or maintain sequential order for validation
• Scaler inclusion : Optionally returns the RobustScaler object with each sample for validation purposes

Dataset instantiation: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb502-522

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb175-176 python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb502-522

DataLoader Configuration

PyTorch DataLoader instances wrap the iterable dataset with additional configuration for efficient batch loading:

Training loader uses shuffle=True in the dataset while validation loader uses shuffle=False to ensure reproducible validation metrics.

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb502-522

collate_with_scaler Function

The collate_with_scaler function handles batch construction when the dataset returns triplets (x, y, scaler). It stacks the tensors into batches while preserving the scaler objects in a list:

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb175-176 python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb506-507

graph LR
    Input["Batch Items\n[(x1, y1, scaler1),\n(x2, y2, scaler2),\n...]"]
Stack["Stack Tensors\ntorch.stack(x_list)\ntorch.stack(y_list)"]
Output["Batched Output\n(x_batch, y_batch, scaler_list)"]
Input --> Stack
 
   Stack --> Output

Training Configuration

PyTorch Lightning Trainer Setup

The training pipeline uses PyTorch Lightning’s Trainer class to orchestrate the training loop, validation, and callbacks:

Configuration values:

graph TB
    subgraph "Training Configuration"
        MaxEpochs["max_epochs\nTypically 1000"]
Accelerator["accelerator='auto'\ndevices=1"]
GradientClip["gradient_clip_val\nFrom model.hparams"]
end
    
    subgraph "Callbacks"
        EarlyStopping["EarlyStopping\nmonitor='val_loss_epoch'\npatience=20\nmode='min'"]
ModelCheckpoint["ModelCheckpoint\nmonitor='val_loss_epoch'\nsave_top_k=1\nfilename='stage1_resume'"]
end
    
    subgraph "Logging"
        TensorBoardLogger["TensorBoardLogger\nlog_dir=OUTPUT_PATH\nname='stage1_autoencoder'"]
end
    
    Trainer["pl.Trainer"]
MaxEpochs --> Trainer
 
   Accelerator --> Trainer
 
   GradientClip --> Trainer
 
   EarlyStopping --> Trainer
 
   ModelCheckpoint --> Trainer
 
   TensorBoardLogger --> Trainer

• EPOCHS : 1000 (allows for long training with early stopping)
• PATIENCE : 20 (compensates for learning rate annealing periods)
• OUTPUT_PATH : project_paths.python_data / "stage1_23_(no_pre_dedupe)" or similar versioned directory

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb468-548

Callbacks

EarlyStopping

The EarlyStopping callback monitors val_loss_epoch and stops training if no improvement occurs for 20 consecutive epochs. This prevents overfitting and saves computational resources.

python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb528-530

ModelCheckpoint

The ModelCheckpoint callback saves the best model based on validation loss:

python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb532-539

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb528-539

Training Execution

The training process is initiated with the Trainer.fit() method:

python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb550-556

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb550-556

Checkpointing and Resuming Training

Saving Checkpoints

Checkpoints are automatically saved by the ModelCheckpoint callback when validation loss improves. The checkpoint file contains:

• Model weights (encoder and decoder parameters)
• Optimizer state
• Learning rate scheduler state
• All hyperparameters (hparams)
• Current epoch number
• Best validation loss

Checkpoint files are saved with the .ckpt extension in the OUTPUT_PATH directory.

Loading and Resuming

The training pipeline supports two modes of checkpoint loading:

1. Resume Training with Existing Configuration

Pass ckpt_path to trainer.fit() to resume training with the exact state from the checkpoint:

python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb555

2. Fine-tune with Modified Hyperparameters

Load the checkpoint explicitly and override specific hyperparameters before training:

This approach is useful for fine-tuning with a lower learning rate after initial training convergence.

python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb479-486

Checkpoint File Naming

The checkpoint filename is determined by the ModelCheckpoint configuration:

• filename : "stage1_resume" produces files like stage1_resume.ckpt or stage1_resume-v1.ckpt, stage1_resume-v2.ckpt, etc.
• Versioning : PyTorch Lightning automatically increments version numbers when the same filename exists

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb475-486 python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb532-539 python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb550-556

graph TB
    subgraph "Logged Metrics"
        TrainLoss["train_loss\nPer-batch training loss"]
ValLoss["val_loss_epoch\nEpoch-averaged validation loss"]
LearningRate["learning_rate\nCurrent optimizer LR"]
end
    
    subgraph "TensorBoard Logger"
        Logger["TensorBoardLogger\nsave_dir=OUTPUT_PATH\nname='stage1_autoencoder'"]
end
    
    subgraph "Log Directory Structure"
        OutputPath["OUTPUT_PATH/"]
VersionDir["stage1_autoencoder/"]
Events["events.out.tfevents.*\nhparams.yaml"]
Checkpoints["*.ckpt checkpoint files"]
end
    
 
   TrainLoss --> Logger
 
   ValLoss --> Logger
 
   LearningRate --> Logger
    
 
   Logger --> OutputPath
 
   OutputPath --> VersionDir
 
   VersionDir --> Events
 
   OutputPath --> Checkpoints

Monitoring and Logging

TensorBoard Integration

The TensorBoardLogger automatically logs training metrics for visualization in TensorBoard:

Log directory structure:

OUTPUT_PATH/
├── stage1_autoencoder/
│   └── version_0/
│       ├── events.out.tfevents.*
│       ├── hparams.yaml
│       └── checkpoints/
├── stage1_resume.ckpt
└── optuna_study.db (if using Optuna)

python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb543

Visualizing Training Progress

Launch TensorBoard to monitor training:

TensorBoard displays:

• Loss curves : Training and validation loss over epochs
• Learning rate schedule : Visualization of LR changes during training
• Hyperparameters : Table of all model hyperparameters
• Gradient histograms : Distribution of gradients (if enabled)

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb541-548

Training Workflow Summary

The complete training workflow follows this sequence:

This pipeline design enables:

• Memory-efficient training through streaming data loading
• Reproducible experiments with comprehensive logging
• Flexible resumption with hyperparameter overrides
• Robust training with gradient clipping and early stopping

Sources: python/narrative_stack/notebooks/old.stage1_training_(no_pre_dedupe).ipynb456-556

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